The Master of Biology Education Study Program FMIPA UNY was established in 2004 as the organizer of the Science Education Study Program with a permit letter Number: 2951/D/T/2003, dated October 10, 2003. The operational permit was obtained on October 2, 2014 through Dirjendikti Decree Number 434/E/0/2014. Since March 2024, the Master of Biology Education Study Program has held an excellent accreditation based on a decree from LAMDIK NUMBER: 271/SK/LAMDIK/Ak/M/III/2024.